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Strangles is diagnosed either directly by detection of S. equi itself or indirectly by detection of rising levels of antibody against S. equi in blood samples, although presence of antibodies against S. equi does not necessarily indicate that an animal is still infectious to other horses.Direct detection of S. equi is either by laboratory isolation or by qPCR detection of its DNA from nasopharyngeal swabs, abscess contents and/ or guttural pouch washes or contents (empyema/chondroids). It should be noted that low bacterial numbers, the concurrent presence of the closely related S. zooepidemicus or recent antibiotic treatment, may make the detection of S. equi by culture more difficult and less sensitive than qPCR.

When taking nasopharyngeal swabs, it is particularly important to sample the back of the pharynx around the opening of the guttural pouch, using specially designed elongated swabs with enlarged absorbent heads (see 1 below). There is no need to use smaller, guarded swabs as the main purpose of swabbing for strangles is to optimise the chances of detecting the organism if it is present. Shedding of S. equi into the nasopharynx often occurs intermittently, so repeated swabbing is recommended to confirm negative results. S. equi should be more reliably confirmed or excluded following testing by qPCR alone or by culture and qPCR of frank pus from obvious draining abscesses, nasal discharges or guttural pouch washes or contents (empyema or chondroids).

The carrier state (continued presence of S. equi infection in the absence of clinical signs) may be diagnosed or excluded by sequential nasopharyngeal swabs or, preferably, endoscopic examination (‘scoping’) of the guttural pouches and submission of guttural pouch washes or contents (empyema or chondroids) for testing by qPCR alone or by culture and qPCR. A series of three nasopharyngeal swabs, usually collected one week apart, will result in detection, by positive qPCR, on at least one of the swabs in >90% of carrier horses. As the sensitivity of S. equi detection for identifying guttural pouch carriers on three nasopharyngeal swabs is broadly equivalent to testing bilateral guttural pouch samples, the latter approach is the recommended sampling protocol for determining infectious status in seropositive, healthy horses.

Although carriers only shed S. equi intermittently, most carriers maintain specific antibodies in their blood and these antibodies can be detected by a blood ELISA test, which may provide a useful tool to help identify some, but not all, carrier animals. Recent investigations of the blood ELISA in detecting chronic carriers have highlighted that negative blood ELISA results, either as single or paired samples, do not guarantee absence of a carrier state. It is therefore preferable for all potential carriers irrespective of their serological status, especially those of high or unknown risk status, to be examined by guttural pouch endoscopy and sampling with screening for S. equi by qPCR alone or by culture and qPCR.